Sample | Total Raw Reads | Total Clean Reads | Clean Reads ≥ Q30 (%) | Total Mapping (%) | Uniquely Mapping (%) | Multiple Mapping (%) |
---|---|---|---|---|---|---|
M6-1 | 43,481,782 | 21,740,891 | 95.10% | 38,819,094 (89.28%) | 37,398,472 (86.01%) | 1,420,622 (3.27%) |
M6-2 | 44,968,352 | 22,484,176 | 95.27% | 40,167,792 (89.32%) | 38,662,056 (85.98%) | 1,505,736 (3.35%) |
M12-1 | 43,042,014 | 21,521,007 | 95.10% | 38,253,100 (88.87%) | 36,860,600 (85.64%) | 1,392,500 (3.24%) |
M12-2 | 42,424,084 | 21,212,042 | 95.27% | 37,886,778 (89.30%) | 36,454,303 (85.93%) | 1,432,475 (3.38%) |
M24-1 | 43,114,324 | 21,557,162 | 94.98% | 38,020,470 (88.19%) | 36,453,422 (84.55%) | 1,567,048 (3.63%) |
M24-2 | 43,816,554 | 21,908,277 | 95.04% | 39,262,607 (89.61%) | 37,740,284 (86.13%) | 1,522,323 (3.47%) |
M48-1 | 43,478,496 | 21,739,248 | 95.48% | 38,974,386 (89.64%) | 37,495,319 (86.24%) | 1,479,067 (3.40%) |
M48-2 | 43,944,060 | 21,972,030 | 95.24% | 39,303,373 (89.44%) | 37,840,028 (86.11%) | 1,463,345 (3.33%) |
M72-1 | 43,969,498 | 21,984,749 | 95.12% | 39,137,319 (89.01%) | 37,646,761 (85.62%) | 1,490,558 (3.39%) |
M72-2 | 43,916,848 | 21,958,424 | 94.99% | 39,174,223 (89.20%) | 37,685,789 (85.81%) | 1,488,434 (3.39%) |
MF6h-1 | 43,546,706 | 21,773,353 | 95.35% | 39,103,422 (89.80%) | 37,662,283 (86.49%) | 1,441,139 (3.31%) |
MF6h-2 | 106,369,018 | 53,184,509 | 95.65% | 95,679,317 (89.95%) | 91,918,225 (86.41%) | 3,761,092 (3.54%) |
MF12h-1 | 43,282,586 | 21,641,293 | 95.37% | 38,468,541 (88.88%) | 37,109,332 (85.74%) | 1,359,209 (3.14%) |
MF12h-2 | 43,353,906 | 21,676,953 | 94.09% | 38,229,230 (88.18%) | 36,764,922 (84.80%) | 1,464,308 (3.38%) |
MF24h-1 | 44,067,724 | 22,033,862 | 95.04% | 39,013,694 (88.53%) | 37,529,355 (85.16%) | 1,484,339 (3.37%) |
MF24h-2 | 62,335,764 | 31,167,882 | 95.58% | 55,555,432 (89.12%) | 53,361,504 (85.60%) | 2,193,928 (3.52%) |
MF48h-1 | 43,206,022 | 21,603,011 | 95.09% | 38,531,483 (89.18%) | 37,092,612 (85.85%) | 1,438,871 (3.33%) |
MF48h-2 | 43,646,946 | 21,823,473 | 94.85% | 38,808,321 (88.91%) | 37,277,147 (85.41%) | 1,531,174 (3.51%) |
MF72h-1 | 44,284,052 | 22,142,026 | 95.36% | 39,277,003 (88.69%) | 37,775,990 (85.30%) | 1,501,013 (3.39%) |
MF72h-2 | 46,183,586 | 23,091,793 | 95.68% | 40,890,323 (88.54%) | 39,237,494 (84.96%) | 1,652,829 (3.58%) |
F6-1 | 43,747,386 | 21,873,693 | 95.24% | 39,228,875 (89.67%) | 37,790,217 (86.38%) | 1,438,658 (3.29%) |
F6-2 | 43,134,878 | 21,567,439 | 95.03% | 38,430,072 (89.09%) | 37,019,513 (85.82%) | 1,410,559 (3.27%) |
F12-1 | 44,385,304 | 22,192,652 | 95.38% | 39,996,282 (90.11%) | 38,444,180 (86.61%) | 1,552,102 (3.50%) |
F12-2 | 44,661,764 | 22,330,882 | 95.03% | 40,340,410 (90.32%) | 38,799,532 (86.87%) | 1,540,878 (3.45%) |
F24-1 | 43,189,076 | 21,594,538 | 95.22% | 38,347,067 (88.79%) | 36,877,093 (85.39%) | 1,469,974 (3.40%) |
F24-2 | 44,463,082 | 22,231,541 | 95.07% | 39,394,892 (88.60%) | 37,873,134 (85.18%) | 1,521,758 (3.42%) |
F48-1 | 43,949,458 | 21,974,729 | 95.07% | 39,324,956 (89.48%) | 37,898,113 (86.23%) | 1,426,843 (3.25%) |
F48-2 | 45,317,286 | 22,658,643 | 95.22% | 40,508,169 (89.39%) | 39,072,622 (86.22%) | 1,435,547 (3.17%) |
F72-1 | 44,865,026 | 22,432,513 | 95.27% | 40,082,434 (89.34%) | 38,582,263 (86.00%) | 1,500,171 (3.34%) |
F72-2 | 39,504,260 | 19,752,130 | 95.11% | 35,405,840 (89.63%) | 34,079,638 (86.27%) | 1,326,202 (3.36%) |
FM6h-1 | 42,579,154 | 21,289,577 | 94.78% | 37,992,466 (89.23%) | 36,520,312 (85.77%) | 1,472,154 (3.46%) |
FM6h-2 | 45,840,416 | 22,920,208 | 95.48% | 40,903,164 (89.23%) | 39,331,697 (85.80%) | 1,571,467 (3.43%) |
FM12h-1 | 44,360,812 | 22,180,406 | 95.25% | 40,286,783 (90.82%) | 38,569,568 (86.95%) | 1,717,215 (3.87%) |
FM12h-2 | 44,086,682 | 22,043,341 | 95.17% | 39,605,117 (89.83%) | 38,137,620 (86.51%) | 1,467,497 (3.33%) |
FM24h-1 | 43,054,264 | 21,527,132 | 94.28% | 38,531,698 (89.50%) | 37,104,476 (86.18%) | 1,427,222 (3.31%) |
FM24h-2 | 43,444,540 | 21,722,270 | 94.89% | 38,982,536 (89.73%) | 37,614,794 (86.58%) | 1,367,742 (3.15%) |
FM48h-1 | 43,449,984 | 21,724,992 | 95.09% | 39,012,802 (89.79%) | 37,536,472 (86.39%) | 1,476,330 (3.40%) |
FM48h-2 | 43,061,960 | 21,530,980 | 94.93% | 38,790,499 (90.08%) | 37,356,348 (86.75%) | 1,434,151 (3.33%) |
FM72h-1 | 48,029,364 | 24,014,682 | 95.08% | 42,940,136 (89.40%) | 41,291,794 (85.97%) | 1,648,342 (3.43%) |
FM72h-2 | 41,789,042 | 20,894,521 | 94.69% | 37,439,400 (89.59%) | 36,044,558 (86.25%) | 1,394,842 (3.34%) |